Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGL_chr1_99845361_99929020	0/0	c0001	4599	125	38	21	47	2	17	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	1/1	c0002	4599	53	2	18	22	1	8	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0003	4599	25	0	7	17	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0004	4599	22	3	4	8	2	5	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0005	4599	21	0	2	14	0	5	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0006	4599	21	9	6	6	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0007	4599	10	0	0	9	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0008	4599	5	5	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0009	4599	3	0	0	3	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0010	4599	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0011	4599	2	0	1	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0012	4599	2	0	0	2	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0013	4599	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0014	4599	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0015	4599	2	2	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0016	4599	1	0	0	0	1	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0017	4599	1	0	0	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0018	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0019	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0020	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0021	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0022	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0023	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0024	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0025	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0026	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0027	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0028	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0029	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0030	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0031	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0032	4599	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0033	4599	1	0	1	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0034	4599	1	0	0	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	c0035	4599	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGMAT_chr1_15566699_15590051	1/1	c0001	1059	130	8	25	64	9	22	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0002	1059	129	23	27	66	3	10	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0003	1059	41	29	5	3	1	3	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0004	1059	31	4	7	14	1	5	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0005	1059	19	13	4	0	2	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0006	1059	7	0	4	3	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0007	1059	7	7	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0008	1059	5	0	0	5	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0009	1059	4	0	4	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0010	1059	3	3	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0011	1059	3	3	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0012	1059	3	1	1	0	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0013	1059	2	1	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0014	1059	1	0	0	0	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0015	1059	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051