JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRAS1_chr4_78052323_78549269	0/0	c0101	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0102	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0103	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0104	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0105	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0106	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0107	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0108	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0109	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0110	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0111	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0112	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0113	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0114	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0115	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0116	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0117	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0118	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0119	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0120	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0121	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0122	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0123	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAT1_chr10_97314271_97326915	1/1	c0001	840	423	91	77	194	18	41	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	c0002	840	4	4	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	c0003	840	1	0	0	0	0	1	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	c0004	840	1	0	1	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	c0005	840	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT2_chr10_97327497_97339729	1/0	c0001	702	395	91	63	192	13	35	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/1	c0002	702	47	3	23	7	3	10	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	c0003	702	4	0	0	4	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	c0004	702	1	0	0	0	0	1	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	c0005	702	1	1	0	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	c0006	702	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	c0007	702	1	1	0	0	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FREM1_chr9_14732152_14915428	0/0	c0001	6540	10	0	2	8	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0002	6540	9	0	2	7	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0003	6540	6	1	3	1	1	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0004	6540	6	0	1	3	0	2	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0005	6540	6	0	4	2	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0006	6540	6	2	1	3	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0007	6540	5	0	1	3	1	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0008	6540	5	0	1	4	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0009	6540	4	1	1	1	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0010	6540	4	0	0	4	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0011	6540	4	0	0	3	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0012	6540	4	0	2	2	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0013	6540	4	0	2	2	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0014	6540	3	3	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0015	6540	3	0	1	1	1	0	copy fasta	FREM1	chr9	14732152	14915428