JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FREM1_chr9_14732152_14915428	0/0	c0066	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0067	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0068	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0069	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0070	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0071	6540	1	0	0	0	1	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0072	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0073	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0074	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0075	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0076	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0077	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0078	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0079	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0080	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0081	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0082	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0083	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0084	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0085	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0086	6540	1	0	0	0	1	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0087	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0088	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0089	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0090	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0091	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0092	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0093	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0094	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0095	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0096	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0097	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0098	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0099	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0100	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0101	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0102	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0103	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0104	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0105	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0106	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0107	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0108	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0109	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0110	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0111	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0112	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0113	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0114	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0115	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428