JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FREM1_chr9_14732152_14915428	0/0	c0216	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0217	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0218	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0219	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0220	6540	1	0	0	1	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0221	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0222	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0223	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0224	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0225	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0226	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0227	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0228	6540	1	0	0	0	1	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0229	6540	1	0	0	0	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0230	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0231	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0232	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0233	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0234	6540	1	1	0	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	c0235	6540	1	0	1	0	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM2_chr13_38682077_38892131	0/0	c0001	9510	27	1	6	17	2	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0002	9510	19	2	3	11	0	3	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0003	9510	14	0	0	14	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0004	9510	12	1	1	10	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0005	9510	10	2	0	5	1	2	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0006	9510	9	1	3	2	0	3	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0007	9510	8	1	1	6	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0008	9510	8	0	1	4	0	3	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0009	9510	6	6	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0010	9510	6	0	2	3	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0011	9510	6	0	0	4	0	2	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0012	9510	4	4	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0013	9510	4	1	3	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0014	9510	4	0	1	1	0	2	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0015	9510	4	0	3	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0016	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0017	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0018	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0019	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0020	9510	3	2	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0021	9510	3	1	0	0	0	2	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0022	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0023	9510	3	1	1	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0024	9510	3	0	3	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0025	9510	3	0	3	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0026	9510	3	0	3	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0027	9510	3	0	2	0	1	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0028	9510	3	0	0	3	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0029	9510	3	0	0	3	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0030	9510	3	3	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131