JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FREM2_chr13_38682077_38892131	0/0	c0031	9510	2	2	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0032	9510	2	0	1	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0033	9510	2	0	0	0	1	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0034	9510	2	0	0	0	2	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0035	9510	2	0	2	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0036	9510	2	0	2	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/1	c0037	9510	2	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0038	9510	2	0	0	2	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0039	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0040	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0041	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0042	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0043	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0044	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0045	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0046	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0047	9510	1	0	0	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0048	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0049	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0050	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0051	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0052	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0053	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0054	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0055	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0056	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0057	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0058	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0059	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0060	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0061	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0062	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0063	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0064	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0065	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0066	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0067	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0068	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0069	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0070	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0071	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0072	9510	1	0	0	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0073	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0074	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0075	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0076	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0077	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0078	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0079	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0080	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131