JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FREM2_chr13_38682077_38892131	0/0	c0081	9510	1	0	0	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0082	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0083	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0084	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0085	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0086	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0087	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0088	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0089	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0090	9510	1	0	0	0	1	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0091	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0092	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0093	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0094	9510	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0095	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0096	9510	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	c0097	9510	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	1/0	c0098	9510	1	0	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM3_chr4_143572302_143705675	0/0	c0001	6420	116	23	27	39	8	19	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0002	6420	39	0	13	12	5	9	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0003	6420	22	7	0	15	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0004	6420	13	9	1	3	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0005	6420	9	8	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0006	6420	7	0	0	7	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0007	6426	7	0	0	7	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0008	6420	5	4	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0009	6420	3	0	3	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0010	6420	3	1	0	0	1	1	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0011	6420	3	2	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0012	6420	3	3	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0013	6420	3	2	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0014	6420	2	2	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0015	6420	2	0	0	0	2	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0016	6420	2	0	2	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0017	6420	2	0	0	2	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0018	6420	2	0	2	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0019	6420	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0020	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0021	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0022	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0023	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0024	6420	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0025	6420	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0026	6420	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	1/0	c0027	6420	1	0	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0028	6420	1	0	0	1	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0029	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0030	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0031	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0032	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675