JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FREM3_chr4_143572302_143705675	0/0	c0033	6420	1	0	0	0	0	1	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/1	c0034	6420	1	0	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	c0035	6420	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREY1_chr11_45901534_45912271	1/1	c0001	297	368	90	77	138	16	45	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0002	297	1	0	0	0	0	1	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0003	297	1	1	0	0	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0004	297	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0005	297	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0006	297	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0007	297	1	1	0	0	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0008	297	1	0	1	0	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	c0009	297	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FRG1_chr4_189935872_189968192	0/1	c0001	777	155	21	34	65	8	26	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	c0002	777	114	29	16	50	6	13	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	c0003	777	77	43	6	25	0	3	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	c0004	777	1	1	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG2B_chr10_133618895_133631795	0/1	c0001	837	277	75	57	100	14	30	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0002	837	87	6	12	52	3	14	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0003	837	46	2	10	33	1	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0004	837	6	6	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0005	837	2	2	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0006	837	1	0	1	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0007	837	1	1	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	c0008	837	1	0	0	1	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2C_chr3_75659328_75672173	1/1	c0001	849	239	69	49	85	7	27	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0002	849	83	4	16	42	10	11	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0003	849	55	15	12	20	1	7	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0004	849	19	0	0	18	0	1	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0005	849	4	1	3	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0006	849	3	0	0	3	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0007	849	2	2	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0008	849	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0009	849	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0010	849	1	0	0	1	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0011	849	1	0	0	1	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	c0012	849	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2_chr4_190019367_190032256	0/0	c0001	840	205	32	41	99	6	27	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0002	840	180	54	25	77	6	18	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0003	840	8	7	0	0	0	1	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0004	840	4	0	4	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0005	840	1	1	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0006	840	1	0	1	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	c0007	840	1	0	1	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRK_chr6_115926149_116065891	1/1	c0001	1518	147	59	35	31	8	12	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0002	1518	111	18	17	54	8	14	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0003	1518	4	0	0	4	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0004	1518	4	0	0	4	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0005	1518	2	0	0	2	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0006	1518	2	2	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0007	1518	2	2	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891