JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRK_chr6_115926149_116065891	0/0	c0008	1518	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRMD1_chr6_168048095_168084212	0/0	c0001	1650	123	7	27	62	6	21	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0002	1650	70	43	11	4	3	9	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	1/1	c0003	1650	59	12	14	28	1	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0004	1650	48	8	9	28	3	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0005	1650	28	1	1	23	1	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0006	1650	25	5	6	10	1	3	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0007	1650	15	1	6	4	2	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0008	1650	4	3	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0009	1650	4	4	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0010	1650	3	0	0	3	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0011	1650	3	1	1	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0012	1650	3	1	1	0	1	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0013	1650	2	2	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0014	1650	2	1	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0015	1650	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0016	1650	1	0	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0017	1650	1	0	0	0	0	1	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0018	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0019	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0020	1650	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0021	1650	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0023	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0024	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0025	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0026	1650	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	c0027	1650	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD3_chr9_83239622_83543401	1/1	c0001	1794	180	71	30	57	5	15	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0002	1794	47	7	11	19	3	7	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0003	1794	11	0	1	9	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0004	1794	1	0	0	0	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0005	1794	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0006	1794	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	c0007	1794	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD4A_chr10_13638706_14335924	0/0	c0001	3120	106	46	33	17	5	5	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0002	3120	10	4	2	2	0	2	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0003	3120	6	3	0	1	0	2	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0004	3111	5	3	1	0	1	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0005	3120	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0006	3111	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0007	3120	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0008	3120	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0009	3120	1	0	0	0	0	1	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0010	3120	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	c0011	3120	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4B_chr3_69163782_69391088	0/1	c0001	3105	94	18	20	33	6	16	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0002	3105	31	13	5	10	2	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0003	3105	29	9	0	12	0	8	copy fasta	FRMD4B	chr3	69163782	69391088