Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA2_chr9_137002234_137033237	0/0	c0024	7311	2	0	2	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0025	7311	2	2	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0026	7311	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0027	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0028	7311	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0029	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0030	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0031	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0032	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0033	7311	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0034	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0035	7311	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0036	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0037	7311	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0038	7311	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0039	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0040	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0041	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0042	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0043	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0044	7311	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0045	7311	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0046	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0047	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0048	7311	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0049	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0050	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0051	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0052	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0053	7311	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0054	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0055	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0056	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0057	7311	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0058	7311	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	0/0	c0001	5115	132	37	22	47	6	20	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0002	5115	42	1	14	19	3	5	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	1/0	c0003	5115	23	17	3	0	0	2	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/1	c0004	5115	15	1	8	2	0	3	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0005	5115	7	7	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0006	5115	4	4	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0007	5115	3	0	2	0	1	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0008	5115	3	0	1	0	0	2	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0009	5115	2	2	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0010	5115	2	0	0	0	2	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0011	5115	2	0	0	2	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0012	5115	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0013	5115	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0014	5115	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0015	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728