JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRMD4B_chr3_69163782_69391088	0/0	c0004	3105	9	0	1	7	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0005	3105	7	7	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0006	3105	6	5	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	1/0	c0007	3105	6	5	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0008	3105	5	3	0	2	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0009	3105	5	0	2	0	0	3	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0010	3105	4	0	2	2	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0011	3105	4	0	1	0	1	2	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0012	3105	4	3	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0013	3105	3	3	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0014	3105	3	2	0	0	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0015	3105	2	1	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0016	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0017	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0018	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0019	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0020	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0021	3105	1	0	0	0	1	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0022	3105	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0023	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0024	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0025	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0026	3105	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	c0027	3105	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD5_chr15_43865764_44200271	0/0	c0001	1713	87	42	19	14	2	10	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0002	1713	46	22	4	18	0	2	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0003	1713	5	5	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0004	1713	5	4	1	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0005	1713	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0006	1713	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	c0007	1713	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD6_chr14_51646910_51735727	0/0	c0001	1869	124	32	16	62	6	8	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	1/0	c0002	1869	111	22	29	41	4	14	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/1	c0003	1869	97	12	19	54	4	7	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0004	1869	21	9	4	4	1	3	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0005	1869	14	0	0	14	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0006	1869	10	8	2	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0007	1869	2	2	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0008	1869	2	2	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0009	1869	2	0	0	2	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0010	1869	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0011	1869	1	0	0	1	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0012	1869	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0013	1869	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0014	1869	1	0	0	1	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0015	1869	1	0	0	0	1	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	c0016	1869	1	0	0	1	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD7_chrX_132071990_132133020	1/1	c0001	2145	146	29	22	75	5	13	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0002	2145	18	5	1	10	0	2	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0003	2145	15	5	1	0	4	5	copy fasta	FRMD7	chrX	132071990	132133020