JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRMD7_chrX_132071990_132133020	0/0	c0004	2145	12	12	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0005	2145	4	2	2	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0006	2145	4	3	1	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0007	2145	3	3	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0008	2145	3	0	3	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0009	2145	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0010	2145	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0011	2145	1	1	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	c0012	2145	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD8_chr11_65381637_65418525	1/1	c0001	1395	111	41	9	45	3	11	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0002	1395	94	21	10	51	2	10	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0003	1395	74	2	22	32	6	12	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0004	1395	29	9	4	9	1	6	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0005	1395	13	0	11	2	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0006	1395	13	0	0	13	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0007	1395	12	12	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0008	1395	4	0	0	4	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0009	1395	2	2	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0010	1395	2	0	0	2	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0011	1395	1	0	1	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0012	1395	1	0	1	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0013	1395	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0014	1395	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0015	1395	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0016	1395	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0017	1395	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0018	1395	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0019	1395	1	0	0	0	0	1	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0020	1395	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0021	1395	1	0	0	0	0	1	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	c0022	1395	1	0	0	0	0	1	copy fasta	FRMD8	chr11	65381637	65418525
FRMPD1_chr9_37645954_37751904	1/1	c0001	4737	57	18	7	19	6	5	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0002	4737	56	3	10	28	1	14	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0003	4737	45	15	10	15	0	5	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0004	4737	17	1	1	15	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0005	4737	17	2	5	9	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0006	4737	15	0	0	15	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0007	4737	12	2	0	10	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0008	4737	11	2	4	5	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0009	4737	9	0	1	8	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0010	4737	9	7	1	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0011	4737	8	2	3	2	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0012	4737	6	1	3	0	1	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0013	4737	5	0	0	3	0	2	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0014	4737	4	4	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0015	4737	4	0	0	4	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0016	4737	4	1	0	2	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0017	4737	3	0	0	3	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0018	4737	3	3	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0019	4737	3	0	0	3	0	0	copy fasta	FRMPD1	chr9	37645954	37751904