JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRMPD1_chr9_37645954_37751904	0/0	c0020	4737	2	0	0	2	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0021	4737	2	1	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0022	4737	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0023	4737	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0024	4737	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0025	4737	2	1	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0026	4737	2	0	0	2	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0027	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0028	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0029	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0030	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0031	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0032	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0033	4737	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0034	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0035	4737	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0036	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0037	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0038	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0039	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0040	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0041	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0042	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0043	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0044	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0045	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0046	4737	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0047	4737	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0048	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0049	4737	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0050	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0051	4737	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0052	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0053	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0054	4737	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0055	4737	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0056	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0057	4737	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	c0058	4737	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD2_chr10_48151562_48279696	0/1	c0001	3930	85	15	21	30	3	15	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0002	3930	45	4	10	21	3	7	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0003	3930	18	0	5	7	2	4	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0004	3930	13	11	2	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0005	3930	11	1	5	2	2	1	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0006	3930	9	8	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0007	3930	8	7	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0008	3930	7	5	2	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0009	3930	5	0	0	5	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0010	3930	5	5	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0011	3930	4	1	0	0	0	3	copy fasta	FRMPD2	chr10	48151562	48279696