JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRMPD2_chr10_48151562_48279696	0/0	c0012	3930	4	1	0	0	0	3	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0013	3930	4	4	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0014	3930	2	0	0	2	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0015	3930	1	0	0	0	0	1	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0016	3930	1	0	0	0	1	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0017	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0018	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0019	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0020	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0021	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0022	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0023	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0024	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0025	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0026	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0027	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0028	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0029	3930	1	0	0	0	1	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0030	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0031	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	1/0	c0032	3930	1	0	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0033	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0034	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0035	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0036	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0037	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0038	3930	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0039	3930	1	0	0	1	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0040	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0041	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0042	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0043	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	c0044	3930	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD3_chrX_107444652_107610251	1/1	c0001	5334	110	12	16	61	5	14	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0002	5334	27	21	4	1	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0003	5334	9	8	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0004	5334	9	9	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0005	5334	7	5	0	1	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0006	5334	6	6	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0007	5335	2	0	0	1	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0008	5334	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0009	5334	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0010	5335	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0011	5334	1	0	0	0	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0012	5334	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0013	5336	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0014	5334	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0015	5334	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0016	5336	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0017	5280	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251