JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRMPD3_chrX_107444652_107610251	0/0	c0018	5334	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0019	5335	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	c0020	5334	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD4_chrX_12133473_12729523	0/0	c0001	5289	64	16	16	17	3	12	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0002	5289	51	0	10	37	1	3	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0003	5289	20	11	5	1	1	2	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0004	5289	8	8	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0005	5289	6	5	1	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0006	5289	5	4	0	0	0	1	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0007	5289	4	2	2	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0008	5289	3	3	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0009	5289	2	0	0	2	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0010	5289	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0011	5289	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0012	5289	1	0	1	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0013	5289	1	0	1	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0014	5289	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0015	5289	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0016	5289	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0017	5289	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0018	5289	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0019	5290	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	c0020	5289	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRRS1L_chr9_109125293_109172249	1/1	c0001	882	425	89	70	203	14	47	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	c0002	882	2	2	0	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	c0003	882	1	0	0	1	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	c0004	882	1	0	0	0	0	1	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	c0005	882	1	1	0	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1_chr1_99698970_99771635	1/0	c0001	1779	126	7	27	72	2	17	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/1	c0002	1779	115	41	25	33	2	13	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0003	1779	54	31	6	16	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0004	1779	15	4	2	1	0	8	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0005	1779	2	2	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0006	1779	2	2	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0007	1779	1	1	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0008	1779	1	0	0	0	0	1	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0009	1779	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	c0010	1779	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRS2_chr12_69465388_69584793	1/1	c0001	1527	221	56	27	115	7	14	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	c0002	1527	119	35	27	40	5	12	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	c0003	1499	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	c0004	1527	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS3_chr6_41765176_41784900	1/1	c0001	1479	410	86	71	191	15	45	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0002	1479	9	7	2	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0003	1479	8	0	7	0	1	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0004	1479	6	0	0	6	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0005	1479	4	0	0	4	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0006	1479	3	0	0	3	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0007	1479	3	3	0	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0008	1479	3	0	3	0	0	0	copy fasta	FRS3	chr6	41765176	41784900