JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRS3_chr6_41765176_41784900	0/0	c0009	1479	2	0	1	0	0	1	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0010	1479	2	2	0	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0011	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0012	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0013	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0014	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0015	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	c0016	1479	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRYL_chr4_48492357_48785279	0/0	c0001	9042	110	15	23	58	9	5	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0002	9042	97	19	18	45	5	10	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	1/0	c0003	9042	20	7	5	1	2	4	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0004	9042	11	11	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0005	9042	7	0	3	4	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0006	9042	3	3	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0007	9042	3	3	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0008	9042	2	0	0	2	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0009	9042	2	0	0	2	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0010	9042	2	2	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/1	c0011	9042	2	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0012	9042	2	0	2	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0013	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0014	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0015	9042	1	0	1	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0016	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0017	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0018	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0019	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0020	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0021	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0022	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0023	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0024	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0025	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0026	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0027	9042	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0028	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0029	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0030	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0031	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0032	9042	1	0	0	0	0	1	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	c0033	9042	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRY_chr13_32026774_32304125	1/0	c0001	9042	42	6	8	21	4	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/1	c0002	9042	39	4	5	21	2	6	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0003	9042	14	4	5	0	3	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0004	9042	14	5	4	2	1	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0005	9042	13	0	0	13	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0006	9042	12	3	5	0	2	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0007	9042	9	0	2	5	1	1	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0008	9042	8	1	2	2	0	3	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0009	9042	7	3	3	0	1	0	copy fasta	FRY	chr13	32026774	32304125