JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRY_chr13_32026774_32304125	0/0	c0010	9042	7	3	1	1	0	2	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0011	9042	7	4	2	0	1	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0012	9042	5	4	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0013	9042	4	4	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0014	9042	3	3	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0015	9042	2	1	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0016	9042	2	0	2	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0017	9042	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0018	9042	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0019	9042	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0020	9042	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0021	9042	2	2	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0022	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0023	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0024	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0025	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0026	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0027	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0028	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0029	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0030	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0031	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0032	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0033	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0034	9042	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0035	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0036	9042	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0037	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0038	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0039	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0040	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0041	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0042	9042	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0043	9042	1	0	0	0	0	1	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0044	9042	1	0	0	0	1	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0045	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0046	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0047	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0048	9042	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0049	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0050	9042	1	0	0	0	0	1	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0051	9042	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0052	9042	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0053	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0054	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0055	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0056	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0057	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0058	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	c0059	9042	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125