JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRZB_chr2_182828275_182871637	1/0	c0001	978	316	60	53	160	8	34	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/1	c0002	978	31	25	1	1	3	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0003	978	8	0	6	0	1	1	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0004	978	5	5	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0005	978	2	0	2	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0006	978	2	0	2	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0007	978	1	0	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0008	978	1	0	0	1	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0009	978	1	1	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0010	978	1	1	0	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0011	978	1	0	0	0	0	1	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	c0012	978	1	0	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FSBP_chr8_94422716_94441944	1/1	c0001	900	418	94	77	194	14	37	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0002	900	5	0	0	5	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0003	890	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0004	900	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0005	900	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0006	900	1	0	0	0	0	1	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	c0007	900	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSCB_chr14_44499149_44512283	0/0	c0001	2514	141	20	24	74	5	18	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/1	c0002	2478	100	13	18	58	2	8	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	1/0	c0003	2478	48	16	15	13	1	2	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0004	2478	39	6	2	28	0	3	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0005	2514	36	1	8	14	2	11	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0006	2514	23	11	2	0	4	6	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0007	2478	11	0	0	11	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0008	2514	7	7	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0009	2406	5	5	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0010	2478	4	4	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0011	2550	4	0	0	4	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0012	2514	3	3	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0013	2478	3	2	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0014	2514	3	3	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0015	2406	2	2	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0016	2478	2	0	0	2	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0017	2478	2	0	0	1	1	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0018	2514	1	0	0	0	0	1	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0019	2514	1	0	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0020	2514	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0021	2514	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0022	2515	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0023	2515	1	0	0	1	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0024	2514	1	0	0	0	0	1	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0025	2514	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0026	2370	1	0	0	0	1	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0027	2514	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0028	2406	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0029	2478	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	c0030	2478	1	0	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCN1_chr7_5587816_5611655	1/1	c0001	1482	267	58	57	111	9	30	copy fasta	FSCN1	chr7	5587816	5611655