JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FSCN1_chr7_5587816_5611655	0/0	c0002	1482	98	31	18	32	3	14	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0003	1482	3	2	1	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0004	1482	2	2	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0005	1482	2	2	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0006	1482	1	0	0	1	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0007	1482	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0008	1482	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN2_chr17_81523377_81542130	1/1	c0001	1479	316	58	65	133	15	43	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0002	1479	36	26	4	4	0	2	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0003	1479	26	0	8	18	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0004	1479	20	0	0	20	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0005	1478	5	0	0	5	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0006	1479	5	0	4	0	1	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0007	1479	4	4	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0008	1479	3	0	2	0	1	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0009	1479	3	3	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0010	1479	2	2	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0011	1479	2	2	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0012	1479	2	0	1	0	1	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0013	1479	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0014	1479	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0015	1479	1	1	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0016	1479	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0017	1479	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0018	1479	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0019	1479	1	0	0	1	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	c0020	1509	1	0	0	1	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN3_chr7_127588736_127607144	0/0	c0001	1497	350	65	67	166	16	36	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0002	1497	31	7	3	15	0	6	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0003	1497	7	6	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0004	1497	7	7	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0005	1497	6	5	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0006	1497	3	3	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0007	1497	3	2	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0008	1497	2	0	0	2	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0009	1497	2	0	0	2	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0010	1497	2	2	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0011	1497	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0012	1497	1	1	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0013	1497	1	0	0	1	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0014	1497	1	0	0	1	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0015	1497	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0016	1497	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	c0017	1497	1	0	0	1	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSD1L_chr9_105443034_105557433	1/1	c0001	1593	369	83	63	178	13	30	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	c0002	1593	6	6	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	c0003	1593	2	0	0	2	0	0	copy fasta	FSD1L	chr9	105443034	105557433