JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FSD1L_chr9_105443034_105557433	0/0	c0004	1593	2	0	1	0	1	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	c0005	1593	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1_chr19_4299598_4328836	1/1	c0001	1491	184	36	28	102	6	10	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0002	1491	162	40	28	59	7	28	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0003	1491	25	2	7	13	1	2	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0004	1491	14	6	6	0	1	1	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0005	1491	9	9	0	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0006	1491	4	1	0	1	0	2	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0007	1491	3	0	2	0	1	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0008	1491	3	0	2	0	0	1	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0009	1491	2	2	0	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0010	1491	1	1	0	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0012	1491	1	0	1	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0013	1491	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0014	1491	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	c0015	1491	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD2_chr15_82750362_82811069	1/0	c0001	2250	199	56	32	84	8	18	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0002	2250	92	18	18	47	5	4	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0003	2250	53	0	11	33	1	8	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/1	c0004	2250	22	7	9	0	3	2	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0005	2250	5	0	3	0	0	2	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0006	2250	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0007	2250	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0008	2250	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0009	2250	1	0	0	0	1	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0010	2270	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0011	2250	1	1	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0013	2250	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0014	2250	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	c0015	2250	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSHB_chr11_30226014_30240194	0/1	c0001	390	226	63	34	101	5	22	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	1/0	c0002	390	161	24	38	73	7	18	copy fasta	FSHB	chr11	30226014	30240194
FSHB_chr11_30226014_30240194	0/0	c0003	390	1	1	0	0	0	0	copy fasta	FSHB	chr11	30226014	30240194
FSHR_chr2_48957157_49159515	0/1	c0001	2088	171	23	29	92	6	20	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	1/0	c0002	2088	135	29	30	51	9	15	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0003	2088	37	35	1	1	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0004	2088	2	0	0	2	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0005	2088	1	1	0	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0006	2088	1	0	1	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0007	2088	1	0	0	0	1	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0008	2088	1	0	1	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	c0009	2088	1	0	0	0	0	1	copy fasta	FSHR	chr2	48957157	49159515
FSIP1_chr15_39595031_39787841	1/1	c0001	1746	107	9	23	56	6	11	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0002	1746	56	3	12	34	0	7	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0003	1746	55	42	8	4	1	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0004	1746	18	8	2	0	3	5	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0005	1746	7	6	1	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0006	1746	4	4	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841