JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FSIP1_chr15_39595031_39787841	0/0	c0007	1746	2	2	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0008	1746	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0009	1746	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0010	1746	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0011	1746	1	0	0	0	0	1	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	c0012	1746	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP2_chr2_185733804_185838290	0/0	c0001	20724	58	5	8	44	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0002	20724	42	3	6	31	0	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0003	20724	33	7	10	9	0	7	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0004	20724	26	6	6	12	0	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0005	20724	26	2	11	4	1	8	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0006	20724	13	12	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0007	20724	10	0	4	6	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0008	20724	8	0	0	8	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0009	20724	8	0	7	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0010	20724	7	0	4	1	1	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0011	20724	6	0	2	0	1	3	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0012	20724	6	6	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0013	20724	5	0	4	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0014	20724	5	5	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	1/0	c0015	20724	5	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0016	20724	5	0	1	4	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0017	20724	5	0	0	5	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0018	20724	5	0	0	5	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0019	20724	5	0	0	0	3	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0020	20724	4	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0021	20724	4	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0022	20724	4	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0023	20724	4	0	0	4	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0024	20724	4	0	1	3	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0025	20724	3	3	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0026	20724	3	0	0	0	0	3	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/1	c0027	20724	3	0	0	0	0	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0028	20724	3	3	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0029	20724	2	2	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0030	20724	2	2	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0031	20724	2	0	0	2	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0032	20724	2	0	0	2	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0033	20724	2	0	2	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0034	20724	2	0	0	2	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0035	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0036	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0037	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0038	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0039	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0040	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0041	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0042	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0043	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0044	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290