JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FSIP2_chr2_185733804_185838290	0/0	c0045	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0046	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0047	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0048	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0049	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0050	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0051	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0052	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0053	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0054	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0055	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0056	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0057	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0058	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0059	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0060	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0061	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0062	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0063	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0064	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0065	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0066	20724	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0067	20724	1	0	0	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0068	20724	1	0	0	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0069	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0070	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0071	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0072	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0073	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0074	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0075	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0076	20724	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0077	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0078	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0079	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0080	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0081	20724	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	c0082	20724	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSTL1_chr3_120387293_120455992	1/1	c0001	927	329	82	60	129	14	42	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	c0002	927	2	0	2	0	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	c0003	927	1	0	0	1	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL3_chr19_671392_688385	1/1	c0001	792	305	72	52	141	8	30	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0002	792	124	22	27	49	10	16	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0003	792	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0004	792	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0005	792	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0006	792	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	c0007	792	1	0	1	0	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL4_chr5_133191455_133617541	1/1	c0001	2529	112	48	18	27	6	11	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0002	2529	43	2	13	19	2	7	copy fasta	FSTL4	chr5	133191455	133617541