JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FSTL4_chr5_133191455_133617541	0/0	c0003	2529	4	2	2	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0004	2529	2	1	1	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0005	2529	2	0	0	0	0	2	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0006	2529	2	2	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0007	2529	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0008	2529	1	0	0	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0009	2529	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0010	2529	1	0	0	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0011	2529	1	0	0	1	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0012	2529	1	0	0	1	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0013	2529	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0014	2529	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0015	2529	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0016	2529	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	c0017	2529	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL5_chr4_161378897_162169000	1/1	c0001	2544	76	30	14	22	6	2	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0002	2544	24	3	6	14	0	1	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0003	2544	12	11	1	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0004	2544	9	0	3	6	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0005	2544	9	2	3	3	0	1	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0006	2544	3	3	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0007	2544	2	2	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0008	2544	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0009	2544	1	1	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0010	2544	1	0	0	0	0	1	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0011	2544	1	0	1	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0012	2544	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0013	2544	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	c0014	2544	1	0	0	0	0	1	copy fasta	FSTL5	chr4	161378897	162169000
FST_chr5_53475629_53492134	1/1	c0001	1035	456	96	74	220	14	50	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	c0002	1035	3	1	0	0	2	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	c0003	1035	2	1	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	c0004	1035	1	0	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FTCDNL1_chr2_199804272_199856192	1/1	c0001	417	383	80	66	190	10	35	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	c0002	417	1	0	0	0	0	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCD_chr21_46131779_46160579	0/1	c0001	1626	73	24	25	12	4	7	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	1/0	c0002	1626	60	21	13	9	6	10	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0003	1626	28	4	2	19	0	3	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0004	1626	11	1	1	5	2	2	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0005	1626	7	0	2	4	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0006	1626	6	1	1	4	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0007	1626	5	4	1	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0008	1626	4	1	1	0	2	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0009	1626	3	0	0	3	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0010	1626	3	3	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0011	1626	2	0	0	0	0	2	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0012	1626	2	0	0	2	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0013	1626	2	0	2	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0014	1626	2	1	1	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0015	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579