JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FTCD_chr21_46131779_46160579	0/0	c0016	1626	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0017	1626	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0018	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0019	1626	1	0	1	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0020	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0021	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0022	1626	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0023	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0024	1626	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0025	1626	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0026	1626	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0027	1673	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0028	1593	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0029	1626	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0030	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0031	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0032	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0033	1626	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0034	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0035	1626	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	c0036	1626	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTH1_chr11_61959285_61972634	1/1	c0001	552	388	94	78	156	16	42	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	c0002	552	1	1	0	0	0	0	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	c0003	552	1	1	0	0	0	0	copy fasta	FTH1	chr11	61959285	61972634
FTHL17_chrX_31066233_31077041	1/1	c0001	552	225	42	53	95	6	27	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0002	552	70	33	6	24	7	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0003	552	32	0	0	26	0	6	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0004	552	3	0	0	3	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0005	552	2	1	1	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0006	552	1	0	0	0	0	1	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0007	552	1	1	0	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0008	552	1	1	0	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	c0009	551	1	0	0	1	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTL_chr19_48960309_48971879	1/0	c0001	528	229	51	46	99	6	26	copy fasta	FTL	chr19	48960309	48971879
FTL_chr19_48960309_48971879	0/1	c0002	528	176	45	30	68	10	22	copy fasta	FTL	chr19	48960309	48971879
FTL_chr19_48960309_48971879	0/0	c0003	528	1	0	0	1	0	0	copy fasta	FTL	chr19	48960309	48971879
FTMT_chr5_121846882_121857833	1/0	c0001	729	400	94	76	168	16	45	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/1	c0002	729	4	0	2	0	0	1	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0003	729	2	0	0	2	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0004	729	2	2	0	0	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0005	680	1	0	1	0	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0006	729	1	0	0	0	0	1	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0007	729	1	0	0	0	0	1	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	c0008	729	1	0	1	0	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTO_chr16_53699156_54126941	1/1	c0001	1518	180	51	30	57	8	32	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	c0002	1518	8	8	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	c0003	1518	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	c0004	1518	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	c0005	1518	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941