JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FTSJ1_chrX_48471199_48491350	1/1	c0001	990	291	70	55	121	9	34	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0002	990	5	4	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0003	990	4	3	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0004	990	3	3	0	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0005	992	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0006	990	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0007	991	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0008	1005	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	c0009	990	1	0	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ3_chr17_63814433_63832663	0/1	c0001	2544	227	59	41	92	12	22	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	1/0	c0002	2544	98	2	21	58	5	11	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0003	2544	13	13	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0004	2544	9	8	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0005	2544	5	4	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0006	2544	4	4	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0007	2544	2	2	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0008	2544	1	0	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0009	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0010	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0011	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0012	2544	1	0	0	0	1	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0013	2544	1	0	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0014	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0015	2544	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0016	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0017	2544	1	0	0	0	0	1	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0018	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0019	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0020	2511	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	c0021	2544	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FUBP1_chr1_77939055_77984072	1/1	c0001	1935	259	69	53	98	8	29	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0002	1935	9	9	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0003	1935	2	0	0	0	0	2	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0004	1935	2	2	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0005	1935	2	0	0	2	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0006	1935	1	0	1	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0007	1935	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0008	1935	1	0	0	0	0	1	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	c0009	1935	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP3_chr9_130574577_130643352	1/1	c0001	1719	353	84	63	154	10	40	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0002	1719	11	0	3	7	0	1	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0003	1719	4	4	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0004	1719	2	0	0	2	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0005	1719	2	2	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0006	1719	1	0	0	1	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0007	1719	1	0	0	0	0	1	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0008	1719	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0009	1719	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0010	1719	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	c0011	1719	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352