JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FUCA1_chr1_23840077_23873290	1/1	c0001	1401	219	65	42	81	8	21	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0002	1401	83	7	19	44	8	5	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0003	1401	59	13	9	29	2	6	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0004	1401	4	0	4	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0005	1401	4	4	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0006	1401	3	3	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0007	1401	2	1	1	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0008	1401	2	0	2	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0009	1401	1	0	1	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	c0012	1401	1	0	0	1	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA2_chr6_143489812_143516720	1/1	c0001	1404	193	26	44	89	6	26	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0002	1404	130	31	15	74	2	8	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0003	1404	76	10	14	40	2	10	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0004	1404	24	22	2	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0005	1404	12	0	5	0	6	1	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0006	1404	2	0	0	2	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0007	1404	2	2	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0008	1404	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0009	1404	1	0	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0011	1404	1	0	0	0	0	1	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	c0012	1404	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUNDC1_chrX_44518639_44547859	1/1	c0001	468	267	70	42	117	9	27	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	c0002	468	43	10	4	23	1	5	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	c0003	468	2	0	1	0	1	0	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	c0004	470	1	0	0	1	0	0	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC2_chrX_155021844_155065304	1/1	c0001	570	265	73	43	112	9	26	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	c0002	570	1	1	0	0	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUNDC2_chrX_155021844_155065304	0/0	c0003	570	1	0	0	1	0	0	copy fasta	FUNDC2	chrX	155021844	155065304
FUOM_chr10_133350158_133363019	1/1	c0001	465	392	97	72	163	18	40	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	c0002	465	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	c0003	465	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	c0004	465	1	1	0	0	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	c0005	465	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FURIN_chr15_90863588_90888457	0/1	c0001	2385	212	75	32	62	13	29	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	1/0	c0002	2385	117	2	29	64	4	17	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0003	2385	10	9	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0004	2385	5	5	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0005	2385	2	2	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0006	2385	2	0	0	2	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0007	2385	2	0	2	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0008	2385	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0009	2385	1	0	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0010	2385	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0011	2385	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0012	2385	1	0	0	0	1	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0013	2385	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0014	2385	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457