JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FURIN_chr15_90863588_90888457	0/0	c0015	2385	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0016	2385	1	0	0	1	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	c0017	2385	1	0	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FUS_chr16_31175139_31196605	0/0	c0001	1581	148	18	34	74	6	16	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/1	c0002	1581	108	4	24	54	6	19	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	1/0	c0003	1581	67	61	3	0	2	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0004	1581	9	9	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0005	1581	6	2	4	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0006	1581	3	0	1	2	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0007	1581	1	0	0	1	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0008	1581	1	1	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0009	1581	1	0	0	0	0	1	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0010	1581	1	0	0	1	0	0	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	c0011	1581	1	1	0	0	0	0	copy fasta	FUS	chr16	31175139	31196605
FUT10_chr8_33365824_33478146	1/1	c0001	1440	130	29	32	48	3	16	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0002	1440	61	7	6	38	1	9	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0003	1440	22	1	0	19	0	2	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0004	1440	10	10	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0005	1440	8	8	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0006	1440	6	6	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0007	1440	6	5	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0008	1440	5	5	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0009	1440	4	4	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0010	1440	4	4	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0011	1440	3	2	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0012	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0014	1440	1	0	0	0	0	1	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0015	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0016	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0017	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0018	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0019	1440	1	0	0	1	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	c0020	1440	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT11_chr10_73767276_73781219	1/1	c0001	1479	346	76	57	159	12	40	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0002	1479	34	0	1	33	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0003	1479	4	3	1	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0004	1479	3	3	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0005	1479	2	2	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0006	1479	2	2	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0007	1479	1	0	1	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0008	1479	1	0	0	1	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	c0009	1479	1	0	0	1	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT1_chr19_48743011_48757641	1/1	c0001	1098	341	73	73	134	13	46	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0002	1098	72	0	5	63	0	4	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0003	1098	19	17	2	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0004	1098	2	2	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0005	1062	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	c0007	1098	1	0	0	0	1	0	copy fasta	FUT1	chr19	48743011	48757641