JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FUT1_chr19_48743011_48757641	0/0	c0008	1098	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT2_chr19_48690971_48710951	0/0	c0000	0	4	0	0	0	0	4	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0001	1032	138	20	38	68	3	9	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0002	1032	85	41	22	0	6	16	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0003	1032	58	0	0	58	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	1/0	c0004	1032	47	4	9	27	2	4	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/1	c0005	1032	12	4	1	0	1	5	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0006	1032	11	0	3	1	0	7	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0007	1032	9	9	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0008	1032	5	5	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0009	1032	5	3	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0010	1032	3	0	2	0	1	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0011	1032	3	0	0	3	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0012	1032	2	0	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0013	1032	2	0	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0014	1032	2	2	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0015	1032	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0016	1032	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0017	1032	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0018	1032	1	0	0	0	0	1	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0019	1032	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0020	1032	1	0	0	0	1	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0021	1032	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	c0022	1032	1	1	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT4_chr11_94538921_94554895	1/1	c0001	1593	345	69	56	170	11	37	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0002	1593	46	6	13	18	1	8	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0003	1593	16	14	2	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0004	1593	4	4	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0005	1593	2	1	1	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0009	1593	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	c0014	1593	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT5_chr19_5860826_5875540	0/0	c0001	1125	156	5	36	94	5	16	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0002	1125	104	28	11	53	4	8	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	1/0	c0003	1125	61	10	9	28	0	13	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/1	c0004	1125	28	3	13	1	4	6	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0005	1125	25	8	6	7	3	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0006	1125	12	12	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0007	1125	8	7	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0008	1125	7	0	2	5	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0009	1125	6	5	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0010	1125	6	6	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0011	1125	4	4	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0012	1125	4	0	1	3	0	0	copy fasta	FUT5	chr19	5860826	5875540