JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FUT5_chr19_5860826_5875540	0/0	c0013	1125	3	3	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0014	1125	3	3	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0015	1125	2	0	1	0	0	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0016	1125	2	2	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0017	1125	2	0	0	2	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0018	1125	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0019	1125	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0020	1125	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0021	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0022	1125	1	0	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0023	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0024	1125	1	1	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0025	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0026	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0027	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0028	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0029	1125	1	0	0	0	0	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0030	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0031	1125	1	0	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0032	1125	1	0	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0033	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0034	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0035	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	c0036	1125	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT6_chr19_5825408_5844702	1/1	c0001	1080	148	9	30	77	5	25	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0002	1080	119	10	25	78	1	5	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0003	1080	49	18	17	8	4	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0004	1080	33	21	4	4	0	4	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0005	1080	17	0	1	10	0	6	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0006	1080	15	14	1	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0007	1080	15	1	0	11	0	3	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0008	1080	10	10	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0009	1080	9	0	3	0	3	3	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0010	1080	3	3	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0011	1080	3	3	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0012	1080	3	0	1	0	2	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0013	1080	2	0	0	0	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0014	1080	2	2	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0015	1080	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0016	1080	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0017	1080	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0018	1080	1	0	0	0	1	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0019	1104	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0020	1080	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0021	1080	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	c0022	1080	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT7_chr9_137025174_137037088	1/1	c0001	1029	305	68	67	118	15	35	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0002	1029	23	14	7	0	2	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0003	1029	9	0	3	6	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0004	1029	3	1	2	0	0	0	copy fasta	FUT7	chr9	137025174	137037088