JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FUT7_chr9_137025174_137037088	0/0	c0005	1029	2	0	2	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0006	1029	2	0	1	0	0	1	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0007	1029	2	0	1	0	1	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0008	1029	1	0	0	0	0	1	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0010	1029	1	0	0	1	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0011	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0012	1029	1	0	0	0	0	1	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0013	1029	1	0	0	1	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0014	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0015	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0016	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0017	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0018	1029	1	0	1	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	c0019	1029	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT8_chr14_65407730_65749121	0/1	c0001	1728	261	75	42	116	9	18	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	1/0	c0002	1728	45	22	14	2	2	4	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0003	1728	36	0	6	24	2	4	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0004	1728	13	0	0	7	0	6	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0005	1728	8	0	0	8	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0006	1728	5	0	1	1	1	2	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0007	1728	3	0	0	3	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0008	1728	1	0	1	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0009	1728	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT9_chr6_96010974_96220612	0/1	c0001	1080	283	54	48	142	12	26	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	1/0	c0002	1080	34	26	4	3	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	c0003	1080	1	0	0	1	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUZ_chr19_49801866_49818292	1/1	c0001	1257	289	52	60	123	12	40	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0002	1257	50	17	6	20	1	6	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0003	1257	26	7	4	15	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0004	1257	23	1	2	16	0	4	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0005	1257	7	7	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0006	1257	3	0	3	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0007	1257	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0008	1257	2	0	2	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0009	1257	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0010	1257	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0011	1304	1	0	0	1	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0012	1267	1	0	0	1	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0013	1257	1	0	1	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	c0014	1257	1	0	0	0	1	0	copy fasta	FUZ	chr19	49801866	49818292
FXN_chr9_69030752_69084076	0/1	c0001	633	403	75	70	197	18	42	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	1/0	c0002	633	11	10	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0003	633	7	7	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0004	633	4	4	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0005	633	3	0	0	3	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0006	633	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076