JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FXN_chr9_69030752_69084076	0/0	c0007	633	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0008	633	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	c0009	633	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXR1_chr3_180907670_180987753	1/1	c0001	1866	296	59	60	123	18	34	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0002	1866	15	11	4	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0003	1866	3	3	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0004	1866	1	0	0	0	0	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0005	1866	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0006	1866	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0007	1866	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0008	1866	1	0	0	0	0	1	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	c0009	1866	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR2_chr17_7586230_7619897	1/1	c0001	2022	403	77	79	188	14	43	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0002	2022	18	17	1	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0003	2022	1	0	0	1	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0004	2022	1	0	0	1	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0005	2022	1	1	0	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0006	2022	1	0	0	0	0	1	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	c0007	2032	1	1	0	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXYD1_chr19_35133824_35148109	1/1	c0001	279	407	98	76	176	13	42	copy fasta	FXYD1	chr19	35133824	35148109
FXYD1_chr19_35133824_35148109	0/0	c0002	279	1	0	0	0	1	0	copy fasta	FXYD1	chr19	35133824	35148109
FXYD2_chr11_117815057_117829744	1/1	c0001	201	477	99	86	226	16	48	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	c0002	201	2	0	0	0	2	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	c0003	201	1	1	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	c0004	201	1	0	0	0	0	1	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	c0005	201	1	0	0	0	0	1	copy fasta	FXYD2	chr11	117815057	117829744
FXYD3_chr19_35110823_35129324	1/1	c0001	264	390	86	73	168	14	47	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	c0002	264	17	3	2	9	0	3	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	c0003	264	3	0	3	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	c0004	264	2	2	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	c0005	264	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	c0006	264	1	0	0	1	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD4_chr10_43366636_43381335	1/1	c0001	270	413	89	73	191	17	41	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	c0002	270	12	0	1	7	1	3	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	c0003	270	1	1	0	0	0	0	copy fasta	FXYD4	chr10	43366636	43381335
FXYD5_chr19_35149735_35174881	0/0	c0001	537	197	25	25	131	2	14	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0002	537	104	46	27	11	4	16	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/1	c0003	537	75	22	17	19	3	13	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0004	537	43	0	0	42	1	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	1/0	c0005	537	35	2	15	8	6	3	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0006	537	2	1	0	1	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0007	537	2	2	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0008	537	2	0	0	2	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0009	537	1	1	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	c0010	537	1	1	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD6_chr11_117831981_117881658	1/1	c0001	288	429	96	73	198	16	44	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	c0002	288	1	0	1	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD7_chr19_35138255_35159302	1/1	c0001	243	438	94	84	196	18	44	copy fasta	FXYD7	chr19	35138255	35159302
FXYD7_chr19_35138255_35159302	0/0	c0002	243	6	6	0	0	0	0	copy fasta	FXYD7	chr19	35138255	35159302
FYB1_chr5_39100252_39224563	1/0	c0001	2490	115	44	9	58	0	3	copy fasta	FYB1	chr5	39100252	39224563