JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FYB1_chr5_39100252_39224563	0/1	c0002	2490	106	18	16	46	5	20	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0003	2490	31	11	6	1	4	9	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0004	2490	29	0	0	28	0	1	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0005	2490	8	7	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0006	2490	7	0	2	5	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0007	2490	5	0	3	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0008	2490	3	3	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0009	2490	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0010	2490	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0011	2490	2	2	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0012	2490	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0013	2490	2	2	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0014	2490	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0015	2490	1	0	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0016	2490	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0017	2490	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0018	2490	1	0	0	0	1	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0019	2490	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0020	2490	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0021	2490	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0022	2490	1	0	0	0	0	1	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0023	2490	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0024	2490	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	c0025	2490	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB2_chr1_56713789_56824404	1/1	c0001	2187	238	34	57	116	6	23	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0002	2187	75	16	9	45	2	3	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0003	2187	21	20	1	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0004	2187	6	2	0	0	0	4	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0005	2187	6	1	0	4	0	1	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0006	2187	4	4	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0007	2187	3	3	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0008	2187	3	0	0	0	0	3	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0009	2187	3	3	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0010	2187	2	0	0	2	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0011	2187	2	0	0	0	0	2	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0012	2187	2	0	0	2	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0013	2187	1	0	0	0	0	1	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0014	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0015	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0016	2187	1	0	0	0	0	1	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0017	2031	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0018	2187	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0019	2187	1	0	1	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0020	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0021	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0022	2187	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0023	2031	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0024	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0025	2187	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	c0026	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404