JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FYB2_chr1_56713789_56824404	0/0	c0027	2187	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYCO1_chr3_45912903_46000824	0/0	c0001	4437	102	5	16	70	3	8	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0002	4437	71	2	6	56	5	2	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0003	4437	24	23	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0004	4437	22	1	7	1	2	11	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	1/1	c0005	4437	15	4	5	0	0	4	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0006	4437	14	1	0	10	0	3	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0007	4437	11	10	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0008	4437	9	0	0	9	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0009	4437	7	0	4	0	3	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0010	4437	5	4	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0011	4437	4	4	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0012	4437	4	0	3	0	1	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0013	4437	4	4	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0014	4437	4	2	2	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0015	4437	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0016	4437	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0017	4437	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0018	4437	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0019	4437	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0020	4437	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0021	4437	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0022	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0023	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0024	4437	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0025	4437	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0026	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0027	4437	1	0	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0028	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0029	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0030	4437	1	0	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0031	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0032	4437	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0033	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0034	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0035	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0036	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0037	4437	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0038	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0039	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0040	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0041	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0042	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0043	4437	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	c0044	4437	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYN_chr6_111655332_111878452	1/1	c0001	1614	227	76	37	90	2	20	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	c0002	1614	5	4	1	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	c0003	1614	1	1	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYN_chr6_111655332_111878452	0/0	c0004	1614	1	1	0	0	0	0	copy fasta	FYN	chr6	111655332	111878452
FYTTD1_chr3_197744883_197792596	0/1	c0001	957	153	30	31	53	7	31	copy fasta	FYTTD1	chr3	197744883	197792596