JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FYTTD1_chr3_197744883_197792596	1/0	c0002	957	92	46	12	17	3	13	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	c0003	957	6	4	2	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	c0004	957	3	3	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	c0005	957	1	0	1	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	0/0	c0006	957	1	1	0	0	0	0	copy fasta	FYTTD1	chr3	197744883	197792596
FZD10_chr12_130157464_130170740	1/1	c0001	1746	284	70	66	102	13	31	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0002	1746	155	24	18	95	2	16	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0003	1746	3	0	0	0	1	2	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0004	1746	3	0	0	0	2	1	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0005	1746	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0006	1746	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0007	1746	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0008	1746	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	c0009	1746	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD1_chr7_91259433_91276326	1/1	c0001	1944	258	50	43	129	7	27	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0002	1947	140	31	27	62	5	15	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0003	1944	6	5	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0004	1944	6	5	1	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0005	1947	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0006	1944	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0007	1947	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0008	1944	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0009	1944	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	c0010	1947	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD2_chr17_44552484_44566262	1/1	c0001	1698	365	70	69	165	18	41	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0002	1698	11	10	1	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0003	1698	10	10	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0004	1698	2	0	1	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0005	1698	2	2	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0006	1698	1	0	0	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0007	1698	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0008	1698	1	0	1	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0009	1698	1	0	0	0	0	1	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0010	1698	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	c0011	1698	1	0	0	1	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD3_chr8_28489212_28579258	0/0	c0001	2001	154	29	25	78	6	16	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	1/1	c0002	2001	152	45	21	68	4	12	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0003	2001	12	10	2	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0004	2001	5	0	0	5	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0005	2001	2	2	0	0	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0006	2019	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0007	2001	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	c0008	2001	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD4_chr11_86940679_86960395	1/1	c0001	1614	445	83	76	228	12	44	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0002	1614	2	0	1	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0003	1614	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0004	1614	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0005	1614	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0006	1614	1	0	1	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0007	1614	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395