JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FZD4_chr11_86940679_86960395	0/0	c0008	1614	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0009	1614	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0010	1614	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	c0011	1614	1	0	0	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD5_chr2_207757598_207774906	0/0	c0001	1758	388	78	66	178	18	48	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0002	1758	28	1	5	22	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/1	c0003	1758	6	0	4	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0004	1758	4	4	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0005	1758	4	4	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0006	1758	4	4	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0007	1758	2	2	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0008	1758	2	0	2	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	1/0	c0009	1758	1	0	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0010	1758	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0011	1758	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	c0012	1758	1	1	0	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD6_chr8_103293898_103337866	0/0	c0001	2121	152	26	28	72	6	20	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	1/0	c0002	2121	132	36	12	68	5	10	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0003	2121	48	19	11	5	5	8	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0004	2121	9	0	9	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0005	2121	8	3	0	4	0	1	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0006	2121	6	3	3	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0007	2121	4	4	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0008	2121	3	1	1	0	0	1	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0009	2121	1	1	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0010	2121	1	1	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/1	c0011	2121	1	0	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	c0012	2121	1	0	0	1	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD7_chr2_202028855_202043441	1/1	c0001	1725	409	90	74	183	15	45	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0002	1725	3	3	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0003	1725	2	0	2	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0004	1725	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0005	1725	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0006	1725	1	1	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0007	1725	1	0	0	0	1	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0008	1725	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	c0009	1761	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD8_chr10_35633247_35647296	1/1	c0001	2085	285	54	53	127	13	36	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0002	2085	52	13	8	28	0	3	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0003	2085	36	16	3	17	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0004	2085	15	7	6	0	1	1	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0005	2083	5	0	0	5	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0006	2085	2	0	0	2	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0007	2085	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0008	2085	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0009	2085	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0010	2085	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0011	2085	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0012	2085	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296