JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FZD8_chr10_35633247_35647296	0/0	c0014	2085	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	c0015	2085	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD9_chr7_73428778_73441120	1/1	c0001	1776	322	72	63	138	10	37	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0002	1776	9	0	1	8	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0003	1776	7	0	2	0	3	2	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0004	1776	5	0	0	5	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0005	1776	4	0	4	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0006	1776	3	2	1	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0007	1776	2	0	0	2	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0008	1776	2	2	0	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0009	1776	2	2	0	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0010	1776	1	0	0	0	0	1	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0011	1776	1	1	0	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0012	1776	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0013	1776	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0014	1776	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0015	1776	1	1	0	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0016	1776	1	0	1	0	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0017	1776	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0018	1776	1	0	0	0	1	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	c0019	1776	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZR1_chr19_3501311_3543334	1/1	c0001	1482	297	85	64	95	9	42	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0002	1482	6	6	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0003	1482	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0004	1482	2	2	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0005	1482	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0006	1482	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0007	1482	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0008	1482	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0009	1482	1	0	0	0	0	1	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0010	1482	1	0	0	0	1	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	FZR1	chr19	3501311	3543334
G0S2_chr1_209670412_209681390	1/1	c0001	312	423	85	68	206	18	44	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	c0002	312	1	1	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G2E3_chr14_30554158_30625064	1/1	c0001	2121	343	81	55	169	8	28	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0002	2121	8	7	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0003	2121	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0004	2121	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0005	2121	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0006	2121	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	c0007	2121	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G3BP1_chr5_151766954_151817785	1/1	c0001	1401	336	94	66	122	16	36	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	c0002	1401	4	0	0	4	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	c0003	1401	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	c0004	1401	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP2_chr4_75637786_75678411	1/1	c0001	1449	330	84	72	116	16	40	copy fasta	G3BP2	chr4	75637786	75678411
G6PC1_chr17_42895799_42919438	1/1	c0001	1074	352	84	67	141	16	42	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	c0002	1074	11	10	1	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	c0003	1074	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	c0004	1074	1	0	0	1	0	0	copy fasta	G6PC1	chr17	42895799	42919438