JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
G6PC1_chr17_42895799_42919438	0/0	c0005	1074	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438
G6PC2_chr2_168896291_168915000	0/1	c0001	1068	210	35	40	108	8	18	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0002	1068	122	0	22	71	6	23	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0003	1068	45	27	13	2	2	1	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0004	1068	34	33	1	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0005	1068	7	0	0	7	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0006	1068	3	0	0	3	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0007	1068	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0008	1068	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	c0010	1068	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC3_chr17_44065735_44081344	1/1	c0001	1041	247	75	56	72	8	34	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0002	1041	121	7	23	81	1	9	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0003	1041	5	5	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0004	1041	4	3	1	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0005	1041	1	0	0	0	1	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0006	1041	1	0	0	1	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0007	1041	1	0	0	1	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0010	1041	1	0	0	0	0	1	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PD_chrX_154526391_154551846	0/1	c0001	1548	178	12	42	99	7	17	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	1/0	c0002	1548	59	29	13	5	1	10	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0003	1548	16	15	1	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0004	1548	10	10	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0005	1548	6	6	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0006	1548	4	4	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0007	1549	2	0	0	2	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0008	1548	2	2	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0009	1548	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0010	1557	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0011	1548	1	0	0	0	1	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0012	1549	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0013	1548	1	0	0	0	0	1	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0014	1548	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0015	1549	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	c0016	1549	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
GAA_chr17_80096581_80124881	1/0	c0001	2859	97	24	25	39	2	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0002	2859	49	3	16	15	5	10	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0003	2859	34	3	0	25	0	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/1	c0004	2859	34	5	0	24	1	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0005	2859	33	0	3	30	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0006	2859	27	0	3	21	1	2	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0007	2859	27	15	7	0	2	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0008	2859	22	6	6	0	4	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0009	2859	19	15	2	0	0	2	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0010	2859	11	6	4	0	1	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0011	2859	9	0	5	2	0	2	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0012	2859	5	0	1	4	0	0	copy fasta	GAA	chr17	80096581	80124881