JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAA_chr17_80096581_80124881	0/0	c0013	2859	4	4	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0014	2859	3	0	0	0	0	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0015	2859	2	0	0	2	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0016	2859	2	2	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0017	2859	2	0	0	1	0	1	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0018	2859	2	0	0	2	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0019	2859	2	2	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0020	2859	2	2	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0021	2859	2	0	0	2	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0022	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0023	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0024	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0025	2859	1	0	0	0	0	1	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0026	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0027	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0028	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0029	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0030	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0031	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0032	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0033	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0034	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0035	2859	1	0	0	0	0	1	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0036	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0037	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0038	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0039	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0040	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0041	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0042	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0043	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0044	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0045	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0046	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0047	2859	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0048	2859	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	c0049	2859	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAB1_chr4_143331876_143479565	1/1	c0001	2085	188	84	40	28	10	24	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	c0002	2085	3	3	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	c0003	2085	2	2	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB1_chr4_143331876_143479565	0/0	c0004	2085	1	1	0	0	0	0	copy fasta	GAB1	chr4	143331876	143479565
GAB2_chr11_78210293_78422820	1/1	c0001	2031	147	39	27	61	2	16	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0002	2031	84	14	14	50	1	5	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0003	2031	12	11	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0004	2031	9	9	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0005	2031	5	5	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0006	2031	5	5	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0007	2031	5	0	5	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0008	2031	4	2	0	1	1	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0009	2031	3	2	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820