JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAB2_chr11_78210293_78422820	0/0	c0010	2031	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0011	2031	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0012	2031	2	0	1	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0013	2031	2	2	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0014	2031	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0015	2031	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0016	2031	1	0	1	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0017	2031	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0018	2031	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	c0019	2031	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB3_chrX_154670249_154756077	1/1	c0001	1764	231	64	50	86	10	19	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0002	1764	7	7	0	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0003	1764	6	0	0	5	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0004	1764	4	0	1	0	1	2	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0005	1764	4	3	1	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0006	1765	1	0	0	0	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0007	1764	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0008	1764	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0009	1764	1	0	0	0	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	c0010	1765	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB4_chr22_16956936_17013222	0/0	c0001	1725	172	44	31	83	9	5	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/1	c0002	1725	135	14	31	69	2	18	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	1/0	c0003	1725	58	4	8	29	4	12	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0004	1725	11	0	5	0	0	6	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0005	1725	11	11	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0006	1725	10	9	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0007	1725	4	4	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0008	1725	4	0	0	4	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0009	1725	3	0	0	3	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0010	1725	3	2	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0011	1725	2	2	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0012	1725	2	0	1	0	1	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0013	1725	2	2	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0014	1725	2	0	0	1	0	1	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0015	1725	2	2	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0016	1725	1	0	0	1	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0017	1725	1	0	0	0	0	1	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0018	1725	1	0	0	1	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0019	1725	1	0	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0020	1725	1	0	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0021	1725	1	0	0	1	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0022	1725	1	0	0	0	0	1	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0023	1725	1	1	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	c0024	1725	1	1	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GABARAPL1_chr12_10207877_10228128	1/1	c0001	354	448	92	74	212	18	50	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL2_chr16_75561379_75582881	1/1	c0001	354	365	85	70	150	12	46	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	c0002	354	2	0	2	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	c0003	354	1	1	0	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAP_chr17_7235008_7247449	1/1	c0001	354	387	89	72	174	18	32	copy fasta	GABARAP	chr17	7235008	7247449
GABARAP_chr17_7235008_7247449	0/0	c0002	354	1	1	0	0	0	0	copy fasta	GABARAP	chr17	7235008	7247449