JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABBR1_chr6_29597238_29638183	0/0	c0001	2886	302	76	57	130	10	29	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/1	c0002	2886	42	9	9	16	1	6	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0003	2886	24	4	3	13	0	4	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0004	2886	21	0	0	20	0	1	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0005	2886	9	3	5	0	1	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0006	2886	3	0	0	0	0	3	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0007	2886	2	0	0	0	0	2	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0008	2886	1	0	0	1	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0009	2886	1	0	0	0	0	1	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0010	2886	1	0	1	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	c0011	2886	1	0	1	0	0	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR2_chr9_98283109_98713935	0/0	c0001	2826	46	14	10	6	1	15	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	1/0	c0002	2826	29	1	12	13	1	1	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0003	2826	13	1	3	6	1	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0004	2826	9	8	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0005	2826	9	8	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0006	2826	6	0	2	2	0	2	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0007	2826	5	4	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0008	2826	5	0	0	4	1	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0009	2826	4	2	2	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0010	2826	4	0	1	3	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0011	2826	4	1	2	1	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0012	2826	4	4	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/1	c0013	2826	3	1	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0014	2826	3	3	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0015	2826	3	3	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0016	2826	2	2	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0017	2826	2	1	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0018	2826	2	2	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0020	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0021	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0022	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0023	2826	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0024	2826	1	0	0	1	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0025	2826	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0026	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0027	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0028	2826	1	1	0	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	c0029	2826	1	0	1	0	0	0	copy fasta	GABBR2	chr9	98283109	98713935
GABPA_chr21_25729972_25777460	1/1	c0001	1365	358	89	57	161	14	35	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0002	1365	9	0	0	9	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0003	1365	4	4	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0004	1365	2	0	1	0	0	1	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0005	1365	1	1	0	0	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0006	1365	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	c0007	1365	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPB1_chr15_50270389_50360198	0/0	c0001	1152	366	82	74	160	6	44	copy fasta	GABPB1	chr15	50270389	50360198
GABPB2_chr1_151065761_151130542	1/1	c0001	1347	203	49	41	73	13	25	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0002	1347	22	13	2	2	1	4	copy fasta	GABPB2	chr1	151065761	151130542