Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGRN_chr1_1015120_1061116	0/0	c0027	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0028	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0029	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0030	6138	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0031	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0032	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0033	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0034	6138	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0035	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0036	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0037	6129	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0038	6138	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0039	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0040	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0041	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0042	6138	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0043	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0044	6138	1	0	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0045	6222	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0046	6224	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0047	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0048	6129	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0049	6138	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0050	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0051	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0052	6138	1	0	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0053	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0054	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0055	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0056	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0057	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0058	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0059	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0060	6138	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0061	6342	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0062	6138	1	0	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0063	6138	1	0	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0064	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0065	6138	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRP_chr16_67477571_67488547	1/1	c0001	399	221	66	36	80	11	26	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	c0002	399	29	25	2	0	0	2	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	c0003	399	3	0	2	0	1	0	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	c0004	399	1	0	0	1	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	c0005	399	1	0	0	1	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	c0006	399	1	1	0	0	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGTPBP1_chr9_85541539_85746954	1/1	c0001	3681	276	77	50	105	7	35	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0002	3681	9	8	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0003	3681	5	0	0	4	0	1	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0004	3681	2	0	0	2	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0005	3681	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954