JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABPB2_chr1_151065761_151130542	0/0	c0003	1347	12	3	7	0	1	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0004	1347	11	8	0	0	1	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0005	1347	9	9	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0006	1347	2	2	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0007	1347	1	0	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0008	1347	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0009	1347	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0010	1347	1	0	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	c0011	1347	1	0	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABRA1_chr5_161843120_161904971	1/1	c0001	1371	294	78	40	138	9	27	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0002	1371	92	7	19	50	5	11	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0003	1371	3	2	1	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0004	1371	2	0	0	2	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0005	1371	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0006	1371	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	c0007	1371	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA2_chr4_46238548_46395128	1/0	c0001	1356	159	69	24	42	9	14	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/1	c0002	1356	98	21	25	36	7	8	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	c0003	1356	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA3_chrX_152161234_152456315	1/1	c0001	1479	204	64	32	81	7	18	copy fasta	GABRA3	chrX	152161234	152456315
GABRA4_chr4_46913900_46998581	1/0	c0001	1665	245	62	35	117	8	22	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/1	c0002	1665	114	21	24	56	4	8	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0003	1665	4	4	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0004	1665	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0005	1665	1	1	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0006	1665	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0007	1665	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0008	1665	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0009	1665	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	c0010	1665	1	0	0	0	0	1	copy fasta	GABRA4	chr4	46913900	46998581
GABRA5_chr15_26862062_26954208	0/0	c0001	1389	201	39	20	116	4	22	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/1	c0002	1389	111	14	26	45	5	20	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0003	1389	33	23	6	3	1	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0004	1389	12	10	2	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	1/0	c0005	1389	7	1	1	2	1	1	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0006	1389	5	3	2	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0007	1389	3	0	2	0	1	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0009	1389	1	1	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0010	1389	1	0	1	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	c0011	1389	1	0	0	0	0	1	copy fasta	GABRA5	chr15	26862062	26954208
GABRA6_chr5_161680721_161707592	0/0	c0001	1362	208	28	32	119	2	27	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0002	1362	121	27	20	63	3	8	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0003	1362	38	1	14	12	6	5	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0004	1362	28	18	7	0	2	1	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	1/0	c0005	1362	17	13	3	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/1	c0006	1362	6	0	0	2	1	2	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0007	1362	3	3	0	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0008	1362	1	1	0	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	c0009	1362	1	1	0	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592