JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABRA6_chr5_161680721_161707592	0/0	c0010	1362	1	0	0	0	0	1	copy fasta	GABRA6	chr5	161680721	161707592
GABRB1_chr4_47026567_47431447	0/1	c0001	1425	75	20	10	30	3	11	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0002	1425	27	9	1	9	0	8	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0003	1425	27	18	4	1	0	4	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0004	1425	8	1	4	2	1	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0005	1425	6	5	1	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0006	1425	4	4	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0007	1425	4	4	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0008	1425	3	0	2	1	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0009	1425	1	0	0	1	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	1/0	c0010	1425	1	0	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	c0012	1425	1	0	0	0	0	1	copy fasta	GABRB1	chr4	47026567	47431447
GABRB2_chr5_161283436_161551725	1/1	c0001	1539	235	61	41	111	5	15	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	c0002	1539	22	9	8	4	0	1	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	c0003	1539	4	1	3	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	c0004	1539	3	0	0	3	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	c0005	1539	1	0	0	0	1	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	c0006	1539	1	1	0	0	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB3_chr15_26538552_26778066	1/1	c0001	1422	192	68	30	52	13	27	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	c0002	1422	5	4	1	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	c0003	1422	3	3	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	c0004	1422	2	0	1	0	1	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	GABRB3	chr15	26538552	26778066
GABRB3_chr15_26538552_26778066	0/0	c0006	1422	1	0	0	0	0	1	copy fasta	GABRB3	chr15	26538552	26778066
GABRD_chr1_2014345_2035758	0/0	c0001	1359	178	60	28	63	8	19	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	1/0	c0002	1359	87	18	25	23	4	16	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/1	c0003	1359	67	2	17	37	3	7	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0004	1359	15	1	2	11	1	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0005	1359	3	3	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0006	1359	2	0	0	2	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0007	1359	2	2	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0008	1359	1	1	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0009	1359	1	0	0	0	0	1	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0012	1359	1	0	0	0	0	1	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0014	1359	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0015	1359	1	0	1	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0016	1359	1	0	1	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	c0017	1359	1	1	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRE_chrX_151948124_151979676	0/0	c0001	1521	149	16	28	73	8	24	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0002	1521	70	16	3	45	2	4	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	1/1	c0003	1521	50	9	16	17	3	3	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0004	1521	30	20	2	7	0	1	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0005	1521	3	0	0	3	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0006	1521	3	3	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0007	1521	2	2	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0008	1521	2	2	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676