JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABRE_chrX_151948124_151979676	0/0	c0009	1521	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0010	1521	1	0	0	0	0	1	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0011	1521	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0012	1522	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0013	1521	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0014	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0015	1521	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0016	1521	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0017	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0018	1521	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0019	1521	1	0	0	0	0	1	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0020	1520	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0021	1523	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0022	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0023	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0024	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	c0025	1521	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRG1_chr4_46030769_46129054	1/0	c0001	1398	151	27	22	75	5	21	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/1	c0002	1398	147	55	32	40	7	12	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0003	1398	3	0	0	3	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0004	1398	2	0	0	2	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0005	1398	1	0	0	0	0	1	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0006	1398	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	c0009	1398	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG2_chr5_162062773_162160526	0/0	c0001	1428	145	34	12	88	5	6	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	1/1	c0002	1428	109	38	19	27	5	18	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0003	1428	52	0	5	37	2	8	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0004	1428	10	8	2	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0005	1428	3	2	1	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0006	1428	2	0	2	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0007	1428	1	0	0	1	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0008	1428	1	1	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0009	1428	1	1	0	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0010	1428	1	0	0	0	0	1	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0011	1428	1	0	0	0	0	1	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0012	1428	1	0	0	1	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	c0013	1428	1	0	1	0	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG3_chr15_26966181_27546984	0/0	c0001	1404	29	9	8	1	3	8	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0002	1404	22	6	8	0	3	5	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0003	1404	10	8	0	1	0	1	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0004	1404	7	6	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0005	1404	4	4	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0006	1404	4	3	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0007	1404	3	3	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0008	1404	2	1	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0009	1404	2	2	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0011	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984