JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABRG3_chr15_26966181_27546984	0/0	c0012	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0013	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0014	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0015	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0016	1404	1	0	1	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0017	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	c0018	1404	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRP_chr5_170778725_170819047	1/1	c0001	1323	172	30	46	58	9	27	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0002	1323	72	6	8	43	5	10	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0003	1323	57	16	11	22	0	8	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0004	1323	20	13	5	2	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0005	1323	15	15	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0006	1323	5	0	0	5	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0007	1323	5	3	0	1	0	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0008	1323	3	3	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0009	1323	3	2	1	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0010	1323	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0011	1357	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0012	1323	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0013	1323	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0014	1323	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0016	1323	1	0	1	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0017	1323	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0018	1323	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	c0019	1323	1	1	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRQ_chrX_152632895_152662542	0/0	c0001	1899	158	49	12	78	1	18	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	1/1	c0002	1899	122	19	41	46	6	8	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0003	1896	12	11	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0004	1898	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0005	1899	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0006	1900	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0007	1899	1	0	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0008	1896	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	c0009	1899	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRR1_chr6_89172504_89222358	0/0	c0001	1440	12	0	1	10	0	1	copy fasta	GABRR1	chr6	89172504	89222358
GABRR1_chr6_89172504_89222358	0/0	c0002	1440	10	0	1	7	0	2	copy fasta	GABRR1	chr6	89172504	89222358
GABRR1_chr6_89172504_89222358	1/0	c0003	1440	3	0	0	1	0	1	copy fasta	GABRR1	chr6	89172504	89222358
GABRR2_chr6_89249464_89320299	0/0	c0001	1398	186	38	32	84	8	24	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	1/0	c0002	1398	82	6	24	32	6	13	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0003	1398	75	37	6	26	2	4	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0004	1398	11	6	3	1	0	1	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0005	1398	3	3	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0006	1398	2	1	1	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/1	c0011	1398	1	0	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	c0012	1398	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299