JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GABRR2_chr6_89249464_89320299	0/0	c0013	1398	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR3_chr3_97980102_98040315	1/1	c0001	1404	325	62	56	156	12	37	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0002	1404	45	19	15	2	4	5	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0003	1404	4	4	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0004	1404	2	0	0	0	0	2	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0005	1404	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0006	1404	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0008	1404	1	0	1	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0009	1404	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GAD1_chr2_170811887_170866151	1/1	c0001	1785	207	43	40	86	9	27	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0002	1785	153	11	25	96	6	15	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0003	1785	17	17	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0004	1785	16	14	2	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0005	1785	6	6	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0006	1785	5	0	0	5	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0007	1785	2	0	0	2	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0008	1785	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0009	1785	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0010	1785	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0011	1785	1	0	1	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0012	1785	1	0	0	0	1	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	c0013	1785	1	1	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD2_chr10_26211774_26309558	1/0	c0001	1758	255	70	50	100	9	25	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/1	c0002	1758	17	0	5	10	0	1	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0003	1758	11	10	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0004	1758	5	0	3	0	2	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0005	1758	2	0	2	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0006	1758	1	0	0	0	1	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0007	1758	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0008	1758	1	0	1	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	c0009	1758	1	1	0	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GADD45A_chr1_67680201_67693334	1/1	c0001	498	399	94	64	188	16	35	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	c0002	498	4	4	0	0	0	0	copy fasta	GADD45A	chr1	67680201	67693334
GADD45A_chr1_67680201_67693334	0/0	c0003	498	1	0	0	0	0	1	copy fasta	GADD45A	chr1	67680201	67693334
GADD45B_chr19_2471127_2483257	1/1	c0001	483	458	93	88	211	16	48	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	c0002	483	1	1	0	0	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45B_chr19_2471127_2483257	0/0	c0003	483	1	0	0	1	0	0	copy fasta	GADD45B	chr19	2471127	2483257
GADD45GIP1_chr19_12948119_12962223	1/1	c0001	669	350	84	69	142	16	37	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0002	669	3	3	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0003	669	2	0	0	2	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0004	669	2	0	0	2	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0005	669	2	0	1	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0006	669	2	1	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0007	669	2	2	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0008	669	2	0	0	2	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0009	669	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0010	669	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0011	669	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223