JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GADD45GIP1_chr19_12948119_12962223	0/0	c0012	669	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0013	669	1	0	1	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0014	669	1	0	0	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	c0015	669	1	0	0	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45G_chr9_89600012_89611555	1/1	c0001	480	444	86	84	210	14	48	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	c0002	480	8	8	0	0	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADL1_chr3_30721197_30899661	1/1	c0001	1566	265	60	48	124	4	27	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0002	1566	4	3	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0003	1566	2	2	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0004	1566	2	2	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0005	1566	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0006	1419	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0007	1566	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0008	1566	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0009	1566	1	0	0	0	0	1	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0010	1566	1	0	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0012	1566	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	c0013	1566	1	0	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GAGE10_chrX_49298646_49324841	0/0	c0001	351	286	60	50	140	11	25	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	c0002	351	14	10	4	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	c0003	351	1	1	0	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	c0004	351	1	1	0	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE12D_chrX_49536733_49554094	0/0	c0001	354	29	2	13	12	0	2	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0002	351	11	1	3	6	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0003	354	11	3	2	5	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0004	354	8	0	1	5	1	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0005	351	3	3	0	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0006	354	3	0	0	0	1	2	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0007	354	2	0	0	2	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0008	351	1	0	1	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0009	355	1	0	0	0	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0010	354	1	1	0	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0011	354	1	0	1	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	c0012	353	1	0	0	0	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12E_chrX_49546289_49563645	0/0	c0001	354	31	9	6	14	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0002	354	17	9	3	3	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0003	354	14	6	3	5	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0004	354	10	0	1	5	1	3	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0005	351	7	7	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0006	351	7	0	2	4	1	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0007	354	5	0	1	3	0	1	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0008	354	4	0	0	2	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0009	351	1	0	0	1	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0010	354	1	0	1	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0011	354	1	0	0	1	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0012	354	1	0	1	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	c0013	351	1	1	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12F_chrX_49555842_49573205	0/0	c0001	354	35	10	3	16	2	4	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0002	354	17	8	4	3	0	2	copy fasta	GAGE12F	chrX	49555842	49573205