JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAGE12F_chrX_49555842_49573205	0/0	c0003	351	10	2	0	6	1	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0004	351	9	5	0	3	0	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0005	354	8	0	1	5	0	2	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0006	354	5	0	1	2	0	2	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0007	351	4	0	2	1	0	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0008	354	2	0	0	2	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0009	354	2	2	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0010	354	2	0	0	2	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0011	353	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0012	355	1	0	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0013	360	1	0	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0014	354	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	c0015	354	1	0	1	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12G_chrX_49565400_49582754	0/0	c0001	351	28	11	1	13	1	2	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0002	351	27	1	6	19	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0003	354	22	15	0	6	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0004	354	5	0	1	3	1	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0005	351	4	0	2	1	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0006	354	2	0	1	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0007	354	2	0	0	2	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0008	351	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0009	354	1	1	0	0	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0010	354	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0011	354	1	1	0	0	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	c0012	354	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12H_chrX_49574949_49592301	0/0	c0001	351	38	7	8	18	2	3	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0002	351	37	5	11	14	2	5	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0003	354	19	9	2	6	2	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0004	351	5	0	1	3	1	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0005	354	5	2	1	1	0	1	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0006	354	3	2	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0007	354	2	1	1	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0008	353	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0009	351	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0010	352	1	1	0	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0011	351	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0012	354	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0013	353	1	0	0	0	0	1	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	c0014	354	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12J_chrX_49317037_49334384	0/0	c0001	354	83	4	16	43	6	14	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0002	354	65	2	12	44	1	6	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0003	354	20	15	5	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	1/0	c0004	354	8	4	0	0	2	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0005	354	4	0	0	4	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0006	354	4	0	3	0	0	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0007	351	2	0	0	0	1	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0008	354	2	2	0	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0009	351	1	1	0	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0010	354	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	c0011	354	1	0	1	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384