JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAK_chr4_844277_937316	0/0	c0016	3936	3	3	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0017	3936	2	0	0	2	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0018	3936	2	0	1	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0019	3936	2	0	0	2	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0020	3936	1	0	0	0	1	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0021	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0022	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0023	3936	1	0	0	0	0	1	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0024	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0025	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0026	3936	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0027	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0028	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0029	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0030	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0031	3936	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0032	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0033	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0034	3936	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0035	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0036	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0037	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0038	3936	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0039	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0040	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0041	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0042	3936	1	0	1	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0043	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0044	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0045	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0046	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0047	3936	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0048	3936	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	c0049	3923	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAL3ST1_chr22_30549635_30579665	1/0	c0001	1272	274	39	61	121	14	38	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/1	c0002	1272	151	39	21	76	3	11	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0003	1272	8	6	0	2	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0004	1272	4	4	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0005	1272	2	0	2	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0006	1272	2	0	0	2	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0007	1272	2	0	0	0	1	1	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0008	1272	2	2	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0009	1272	2	2	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0010	1272	1	0	1	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0011	1272	1	1	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0012	1272	1	0	1	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0013	1272	1	1	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	c0014	1272	1	0	0	1	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST2_chr2_241771822_241809287	1/1	c0001	1197	140	33	33	44	9	19	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0002	1197	106	43	8	44	4	7	copy fasta	GAL3ST2	chr2	241771822	241809287