JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAL3ST2_chr2_241771822_241809287	0/0	c0003	1197	40	3	9	24	0	4	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0004	1197	6	1	1	1	1	2	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0005	1197	5	1	2	0	2	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0006	1197	4	0	0	4	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0007	1197	3	3	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0008	1197	2	2	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0009	1197	2	2	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0010	1197	1	0	0	0	0	1	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0012	1197	1	0	1	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0013	1197	1	0	0	0	0	1	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	c0015	1197	1	0	0	1	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST3_chr11_66035765_66054161	0/1	c0001	1296	236	45	47	109	12	22	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0002	1296	40	6	7	18	2	7	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	1/0	c0003	1296	35	16	1	17	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0004	1296	23	2	1	20	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0005	1297	14	1	2	10	0	1	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0006	1296	11	10	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0007	1296	7	6	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0008	1297	4	0	0	4	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0009	1296	4	0	4	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0010	1296	3	2	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0011	1296	2	0	2	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0012	1296	2	2	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0013	1297	2	0	0	2	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0014	1296	2	0	0	2	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0015	1297	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0016	1297	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0017	1296	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0018	1296	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0019	1296	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0020	1296	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0021	1296	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0022	1296	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	c0023	1296	1	0	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST4_chr7_100154244_100173617	0/0	c0001	1461	206	27	28	115	8	28	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	1/1	c0002	1461	146	24	35	55	8	22	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0003	1461	15	14	1	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0004	1461	11	0	0	11	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0005	1461	10	7	3	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0006	1461	4	3	1	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0007	1461	2	2	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0008	1461	2	0	2	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0009	1461	2	2	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0010	1461	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0011	1461	1	0	0	1	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0012	1461	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	c0013	1461	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GALC_chr14_87928014_87998182	0/1	c0001	2058	126	31	27	49	4	14	copy fasta	GALC	chr14	87928014	87998182