Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGTPBP1_chr9_85541539_85746954	0/0	c0006	3681	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0007	3681	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0008	3681	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0009	3681	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0010	3681	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0011	3681	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0012	3681	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0013	3681	1	0	0	0	1	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	c0014	3681	1	0	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTR1_chr3_148692903_148748003	1/1	c0001	1080	167	50	25	64	7	19	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	c0002	1080	147	13	36	79	7	12	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	c0003	1080	34	31	3	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	c0004	1080	1	0	0	0	0	1	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	c0005	1080	1	0	0	1	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR2_chrX_116165744_116179974	1/1	c0001	1092	321	73	48	153	13	32	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	c0002	1092	7	4	3	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	c0003	1089	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	c0004	1092	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	c0005	1092	1	1	0	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	c0006	1085	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTRAP_chr1_11731136_11755769	1/1	c0001	480	419	91	84	178	18	46	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	c0002	480	1	1	0	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGT_chr1_230697523_230719122	0/1	c0001	1431	323	86	45	154	7	30	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0002	1431	86	5	24	35	9	13	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0003	1431	36	4	8	18	1	5	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	1/0	c0004	1431	5	0	3	0	1	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0005	1431	1	0	1	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0006	1431	1	0	0	1	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0007	1431	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0008	1431	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0009	1431	1	0	1	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGXT2_chr5_34993102_35052949	0/0	c0001	1545	80	23	20	25	6	6	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0002	1545	35	12	2	17	0	4	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0003	1545	35	1	10	8	4	12	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0004	1545	34	0	11	21	0	2	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0005	1545	33	0	2	30	1	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0006	1545	30	3	9	11	0	7	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0007	1545	25	19	0	6	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0008	1545	14	0	5	8	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0009	1545	12	0	0	12	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0010	1545	9	0	5	1	2	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0011	1545	8	7	1	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/1	c0012	1545	8	1	2	1	1	2	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0013	1545	8	0	1	6	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0014	1545	7	1	0	6	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0015	1545	5	5	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0016	1545	4	4	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0017	1545	4	0	0	4	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0018	1545	3	0	2	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949